Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.
Identifieur interne : 001B90 ( Main/Exploration ); précédent : 001B89; suivant : 001B91Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.
Auteurs : Mitra Menon [États-Unis] ; William J. Barnes [États-Unis] ; Matthew S. Olson [États-Unis]Source :
- The New phytologist [ 1469-8137 ] ; 2015.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Adaptation physiologique (génétique), Alaska (MeSH), Analyse de variance (MeSH), Congélation (MeSH), Données de séquences moléculaires (MeSH), Gènes de plante (MeSH), Génétique des populations (MeSH), Géographie (MeSH), Introns (génétique), Nucléotides (génétique), Polymorphisme de nucléotide simple (génétique), Populus (croissance et développement), Populus (génétique), Régulation de l'expression des gènes végétaux (MeSH), Saisons (MeSH), Variation génétique (MeSH).
- MESH :
- croissance et développement : Populus.
- génétique : ARN messager, Adaptation physiologique, Introns, Nucléotides, Polymorphisme de nucléotide simple, Populus.
- métabolisme : ARN messager.
- Alaska, Analyse de variance, Congélation, Données de séquences moléculaires, Gènes de plante, Génétique des populations, Géographie, Régulation de l'expression des gènes végétaux, Saisons, Variation génétique.
English descriptors
- KwdEn :
- Adaptation, Physiological (genetics), Alaska (MeSH), Analysis of Variance (MeSH), Freezing (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genetic Variation (MeSH), Genetics, Population (MeSH), Geography (MeSH), Introns (genetics), Molecular Sequence Data (MeSH), Nucleotides (genetics), Polymorphism, Single Nucleotide (genetics), Populus (genetics), Populus (growth & development), RNA, Messenger (genetics), RNA, Messenger (metabolism), Seasons (MeSH).
- MESH :
- chemical , genetics : Nucleotides, RNA, Messenger.
- chemical , metabolism : RNA, Messenger.
- geographic : Alaska.
- genetics : Adaptation, Physiological, Introns, Polymorphism, Single Nucleotide, Populus.
- growth & development : Populus.
- Analysis of Variance, Freezing, Gene Expression Regulation, Plant, Genes, Plant, Genetic Variation, Genetics, Population, Geography, Molecular Sequence Data, Seasons.
Abstract
Protection against freeze damage during the growing season influences the northern range limits of plants. Freeze tolerance and freeze avoidance are the two major freeze resistance strategies. Winter survival strategies have been extensively studied in perennials, but few have addressed them and their genetic basis during the growing season. We examined intraspecific phenotypic variation in freeze resistance of Populus balsamifera across latitude and the growing season. To investigate the molecular basis of this variation, we surveyed nucleotide diversity and examined patterns of gene expression in the poplar C-repeat binding factor (CBF) gene family. Foliar freeze tolerance exhibited latitudinal and seasonal variation indicative of natural genotypic variation. CBF6 showed signatures of recent selective sweep. Of the 46 SNPs surveyed across the six CBF homologs, only CBF2_619 exhibited latitudinal differences consistent with increased freeze tolerance in the north. All six CBF genes were cold inducible, but showed varying patterns of expression across the growing season. Some Poplar CBF homologs exhibited patterns consistent with historical selection and clinal variation in freeze tolerance documented here. However, the CBF genes accounted for only a small amount of the variation, indicating that other genes in this and other molecular pathways likely play significant roles in nature.
DOI: 10.1111/nph.13381
PubMed: 25809016
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.</title><author><name sortKey="Menon, Mitra" sort="Menon, Mitra" uniqKey="Menon M" first="Mitra" last="Menon">Mitra Menon</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author><author><name sortKey="Barnes, William J" sort="Barnes, William J" uniqKey="Barnes W" first="William J" last="Barnes">William J. Barnes</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author><author><name sortKey="Olson, Matthew S" sort="Olson, Matthew S" uniqKey="Olson M" first="Matthew S" last="Olson">Matthew S. Olson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:25809016</idno><idno type="pmid">25809016</idno><idno type="doi">10.1111/nph.13381</idno><idno type="wicri:Area/Main/Corpus">001D68</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001D68</idno><idno type="wicri:Area/Main/Curation">001D68</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001D68</idno><idno type="wicri:Area/Main/Exploration">001D68</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.</title><author><name sortKey="Menon, Mitra" sort="Menon, Mitra" uniqKey="Menon M" first="Mitra" last="Menon">Mitra Menon</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author><author><name sortKey="Barnes, William J" sort="Barnes, William J" uniqKey="Barnes W" first="William J" last="Barnes">William J. Barnes</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author><author><name sortKey="Olson, Matthew S" sort="Olson, Matthew S" uniqKey="Olson M" first="Matthew S" last="Olson">Matthew S. Olson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409</wicri:regionArea><wicri:noRegion>79409</wicri:noRegion></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adaptation, Physiological (genetics)</term><term>Alaska (MeSH)</term><term>Analysis of Variance (MeSH)</term><term>Freezing (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genetics, Population (MeSH)</term><term>Geography (MeSH)</term><term>Introns (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Nucleotides (genetics)</term><term>Polymorphism, Single Nucleotide (genetics)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>RNA, Messenger (genetics)</term><term>RNA, Messenger (metabolism)</term><term>Seasons (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term><term>ARN messager (métabolisme)</term><term>Adaptation physiologique (génétique)</term><term>Alaska (MeSH)</term><term>Analyse de variance (MeSH)</term><term>Congélation (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Génétique des populations (MeSH)</term><term>Géographie (MeSH)</term><term>Introns (génétique)</term><term>Nucléotides (génétique)</term><term>Polymorphisme de nucléotide simple (génétique)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Saisons (MeSH)</term><term>Variation génétique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Nucleotides</term><term>RNA, Messenger</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Messenger</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Alaska</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Adaptation, Physiological</term><term>Introns</term><term>Polymorphism, Single Nucleotide</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Adaptation physiologique</term><term>Introns</term><term>Nucléotides</term><term>Polymorphisme de nucléotide simple</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN messager</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Analysis of Variance</term><term>Freezing</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Genetic Variation</term><term>Genetics, Population</term><term>Geography</term><term>Molecular Sequence Data</term><term>Seasons</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alaska</term><term>Analyse de variance</term><term>Congélation</term><term>Données de séquences moléculaires</term><term>Gènes de plante</term><term>Génétique des populations</term><term>Géographie</term><term>Régulation de l'expression des gènes végétaux</term><term>Saisons</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Protection against freeze damage during the growing season influences the northern range limits of plants. Freeze tolerance and freeze avoidance are the two major freeze resistance strategies. Winter survival strategies have been extensively studied in perennials, but few have addressed them and their genetic basis during the growing season. We examined intraspecific phenotypic variation in freeze resistance of Populus balsamifera across latitude and the growing season. To investigate the molecular basis of this variation, we surveyed nucleotide diversity and examined patterns of gene expression in the poplar C-repeat binding factor (CBF) gene family. Foliar freeze tolerance exhibited latitudinal and seasonal variation indicative of natural genotypic variation. CBF6 showed signatures of recent selective sweep. Of the 46 SNPs surveyed across the six CBF homologs, only CBF2_619 exhibited latitudinal differences consistent with increased freeze tolerance in the north. All six CBF genes were cold inducible, but showed varying patterns of expression across the growing season. Some Poplar CBF homologs exhibited patterns consistent with historical selection and clinal variation in freeze tolerance documented here. However, the CBF genes accounted for only a small amount of the variation, indicating that other genes in this and other molecular pathways likely play significant roles in nature. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25809016</PMID><DateCompleted><Year>2016</Year><Month>04</Month><Day>26</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>207</Volume><Issue>3</Issue><PubDate><Year>2015</Year><Month>Aug</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.</ArticleTitle><Pagination><MedlinePgn>710-22</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.13381</ELocationID><Abstract><AbstractText>Protection against freeze damage during the growing season influences the northern range limits of plants. Freeze tolerance and freeze avoidance are the two major freeze resistance strategies. Winter survival strategies have been extensively studied in perennials, but few have addressed them and their genetic basis during the growing season. We examined intraspecific phenotypic variation in freeze resistance of Populus balsamifera across latitude and the growing season. To investigate the molecular basis of this variation, we surveyed nucleotide diversity and examined patterns of gene expression in the poplar C-repeat binding factor (CBF) gene family. Foliar freeze tolerance exhibited latitudinal and seasonal variation indicative of natural genotypic variation. CBF6 showed signatures of recent selective sweep. Of the 46 SNPs surveyed across the six CBF homologs, only CBF2_619 exhibited latitudinal differences consistent with increased freeze tolerance in the north. All six CBF genes were cold inducible, but showed varying patterns of expression across the growing season. Some Poplar CBF homologs exhibited patterns consistent with historical selection and clinal variation in freeze tolerance documented here. However, the CBF genes accounted for only a small amount of the variation, indicating that other genes in this and other molecular pathways likely play significant roles in nature. </AbstractText><CopyrightInformation>© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Menon</LastName><ForeName>Mitra</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barnes</LastName><ForeName>William J</ForeName><Initials>WJ</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olson</LastName><ForeName>Matthew S</ForeName><Initials>MS</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>KM013477</AccessionNumber><AccessionNumber>KM013687</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009711">Nucleotides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000222" MajorTopicYN="N">Adaptation, Physiological</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000413" MajorTopicYN="N" Type="Geographic">Alaska</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000704" MajorTopicYN="N">Analysis of Variance</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005615" MajorTopicYN="Y">Freezing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005828" MajorTopicYN="N">Genetics, Population</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009711" MajorTopicYN="N">Nucleotides</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="Y">Seasons</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">C-repeat binding factor (CBF) gene family</Keyword><Keyword MajorTopicYN="N">balsam poplar (Populus balsamifera)</Keyword><Keyword MajorTopicYN="N">climate change</Keyword><Keyword MajorTopicYN="N">freeze avoidance</Keyword><Keyword MajorTopicYN="N">gene expression</Keyword><Keyword MajorTopicYN="N">growing season frost</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>09</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>02</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>3</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>3</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>4</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25809016</ArticleId><ArticleId IdType="doi">10.1111/nph.13381</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Menon, Mitra" sort="Menon, Mitra" uniqKey="Menon M" first="Mitra" last="Menon">Mitra Menon</name></noRegion><name sortKey="Barnes, William J" sort="Barnes, William J" uniqKey="Barnes W" first="William J" last="Barnes">William J. Barnes</name><name sortKey="Olson, Matthew S" sort="Olson, Matthew S" uniqKey="Olson M" first="Matthew S" last="Olson">Matthew S. Olson</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001B90 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001B90 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:25809016
|texte= Population genetics of freeze tolerance among natural populations of Populus balsamifera across the growing season.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:25809016" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |